PXD045385-1

PXD045385 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Targeted RNase H-mediated Extraction of crosslinked RBPs (TREX) for assessing region-specific NORAD lncRNA interactome
Description	We used Targeted RNase H-mediated Extraction of crosslinked RBPs (TREX)to assess the endogenous binding partners of the ND4 segment of NORAD long noncoding RNA (lncRNA) in human HCT116 cells. Extracted proteins from RNase H digested and control cells (4 replicate per region per condition) were compared, using label-free (LFQ) Quantitative proteomics.
HostingRepository	PRIDE
AnnounceDate	2023-12-27
AnnouncementXML	Submission_2023-12-27_08:18:30.507.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Faraz Mardakheh
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-09-14 05:40:28	ID requested
⏵ 1	2023-12-27 08:18:30	announced
2	2024-10-22 06:18:42	announced	2024-10-22: Updated project metadata.

Publication List

10.1101/2023.06.30.547259;

10.1101/2023.06.30.547259;

Keyword List

submitter keyword: NORAD
ND4
lncRNA
TREX
RBP
RNA Interactome
LC-MS/MS
Quantitative proteomics

submitter keyword: NORAD

ND4

lncRNA

TREX

RBP

RNA Interactome

LC-MS/MS

Quantitative proteomics

Contact List

Faraz K. Mardakheh
contact affiliation	Centre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K.
contact email	f.mardakheh@qmul.ac.uk
lab head
Faraz Mardakheh
contact affiliation	Barts Cancer Institute
contact email	f.mardakheh@qmul.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD045385
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD045385

PRIDE project URI

Repository Record List

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