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PXD045385

PXD045385 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleTargeted RNase H-mediated Extraction of crosslinked RBPs (TREX) for assessing region-specific NORAD lncRNA interactome
DescriptionWe used Targeted RNase H-mediated Extraction of crosslinked RBPs (TREX)to assess the endogenous binding partners of the ND4 segment of NORAD long noncoding RNA (lncRNA) in human HCT116 cells. Extracted proteins from RNase H digested and control cells (4 replicate per region per condition) were compared, using label-free (LFQ) Quantitative proteomics.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:18:42.094.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFaraz Mardakheh
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListphosphorylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive Plus
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-09-14 05:40:28ID requested
12023-12-27 08:18:30announced
22024-10-22 06:18:42announced2024-10-22: Updated project metadata.
Publication List
10.1101/2023.06.30.547259;
Keyword List
submitter keyword: NORAD
ND4
lncRNA
TREX
RBP
RNA Interactome
LC-MS/MS
Quantitative proteomics
Contact List
Faraz K. Mardakheh
contact affiliationCentre for Cancer Cell & Molecular Biology Barts Cancer Institute Queen Mary University of London Charterhouse Square London EC1M 6BQ U.K.
contact emailf.mardakheh@qmul.ac.uk
lab head
Faraz Mardakheh
contact affiliationBarts Cancer Institute
contact emailf.mardakheh@qmul.ac.uk
dataset submitter
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