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PXD044701-2

PXD044701 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleGlobal-scale enrichment and identification of O-GlcNAc modified peptides in Arabidopsis seedling (S1 Part 1: HCD and EThcD part from Eclipse)
DescriptionO-GlcNAcylation is a crucial post-translational modification of proteins observed in both plants and animals and plays a key role in growth and development. However, our understanding of this PTM in plants lags behind animals. To bridge this knowledge gap, we performed a global scale enrichment of O-GlcNAc modified peptides after LWAC enrichment on Col seedlings. A 15N-labeled spy-4 is also included in the samples for comparison. Enriched samples were subjected to extensive reverse high pH fractionation followed by LC-MS-MS analysis on Thermo Fisher Orbitrap mass spectrometer (QExactive HF) using HCD modes (Files initiate with Q) or on Thermo Fisher Orbitrap mass spectrometer Eclipse with ETD using HCD 204 triggered EtHCD.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:40:32.070.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterShouling Xu
SpeciesList scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationListiodoacetamide derivatized residue
InstrumentOrbitrap Eclipse
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-08-21 08:52:35ID requested
12024-05-21 12:07:01announced
22024-10-22 06:40:32announced2024-10-22: Updated project metadata.
Publication List
10.1016/j.mcpro.2024.100732;
Shrestha R, Karunadasa S, Grismer TS, Reyes AV, Xu SL, SECRET AGENT O-GlcNAcylates Hundreds of Proteins Involved in Diverse Cellular Processes in Arabidopsis. Mol Cell Proteomics, 23(4):100732(2024) [pubmed]
Keyword List
submitter keyword: mass spectrometry,O-GlcNAcylation, proteomics., Lectin weak affinity chromatography (LWAC)
Contact List
SHOULING XU
contact affiliationCarnegie MS Facility
contact emailSXU@CIW.EDU
lab head
Shouling Xu
contact affiliationCarnegie Institution at Stanford
contact emailsxu@ciw.edu
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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