PXD044312-1

PXD044312 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Multi-Protease Investigation of Arabidopsis Thaliana Cell Culture Mitochondria
Description	The aim of this project is to deeply map the proteome of mitochondria from the model plant Arabidopsis thaliana. For this purpose, mitochondria were isolated from Arabidopsis cell cultures, their proteins extracted and processed using SP3 digestion. To achieve high sequence coverage, the proteins were digested with a total of six different proteases and measured using sensitive timsTOF Pro hardware and TIMS fractionation.
HostingRepository	MassIVE
AnnounceDate	2023-12-08
AnnouncementXML	Submission_2023-12-08_07:31:20.869.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Nils Rugen
SpeciesList	scientific name: Arabidopsis thaliana; common name: thale cress; NCBI TaxID: 3702;
ModificationList	Carbamidomethyl; Acetyl; L-methionine sulfoxide
Instrument	timsTOF Pro

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-02 23:21:18	ID requested
⏵ 1	2023-12-08 07:31:21	announced

Publication List

Rugen N, Senkler M, Braun HP, Deep proteomics reveals incorporation of unedited proteins into mitochondrial protein complexes in Arabidopsis. Plant Physiol, 195(2):1180-1199(2024) [pubmed]

Rugen N, Senkler M, Braun HP, Deep proteomics reveals incorporation of unedited proteins into mitochondrial protein complexes in Arabidopsis. Plant Physiol, 195(2):1180-1199(2024) [pubmed]

Keyword List

submitter keyword: Arabidopsis thaliana, Mitochondria, Multi-Protease, timsTOF Pro

submitter keyword: Arabidopsis thaliana, Mitochondria, Multi-Protease, timsTOF Pro

Contact List

Nils Rugen
contact affiliation	Leibniz University Hannover
contact email	rugen@genetik.uni-hannover.de
lab head
Hans-Peter Braun
contact affiliation	Plant Genetics, department plant proteomics
contact email	braun@genetik.uni-hannover.de
lab head
Nils Rugen
contact affiliation	Leibniz University Hannover
contact email	rugen@genetik.uni-hannover.de
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092578/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092578/