PXD044301 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | WELFARE OF RAINBOW TROUT AT SLAUGHTER: INTEGRATING BEHAVIOURAL, PHYSIOLOGICAL, PROTEOMIC AND QUALITY INDICATORS |
Description | This study compared the brain proteome response of fish submitted to cold shock by fast-chilling (FC) as a novel stunning method (with fish immersed in liquid water at -8ÂșC), asphyxia (ASP) (as the currently used method), electrical stunning (ES) and anaesthesia (AN) with MS-222, by integrating it with physiological, behavioural and quality welfare indicators. Fish trials were conducted in triplicate tanks and two fish per tank were randomly sampled for MS analysis. One of the objectives of this integrative work was to disclose most significant changes in the brain proteome of rainbow trout (O. mykiss) subjected to four types of stunning methods that could help to elucidate about welfare standards. |
HostingRepository | PRIDE |
AnnounceDate | 2024-01-10 |
AnnouncementXML | Submission_2024-01-10_12:10:19.326.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD044301 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Ana Paula Farinha |
SpeciesList | scientific name: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri); NCBI TaxID: 8022; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-08-02 06:57:05 | ID requested | |
⏵ 1 | 2024-01-10 12:10:19 | announced | |
Publication List
Keyword List
submitter keyword: fish welfare, brain, shotgun proteomics,Oncorhynchus mykiss, farmed fish |
Contact List
Marco A. Cerqueira (Project responsible), Pedro M. Rodrigues |
contact affiliation | Centre of Marine Sciences (CCMAR), Portugal University of Algarve (UAlg), Portugal |
contact email | macerqueira@ualg.pt |
lab head | |
Ana Paula Farinha |
contact affiliation | Universidade Algarve |
contact email | apaula.farinha@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD044301 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD044301
- Label: PRIDE project
- Name: WELFARE OF RAINBOW TROUT AT SLAUGHTER: INTEGRATING BEHAVIOURAL, PHYSIOLOGICAL, PROTEOMIC AND QUALITY INDICATORS