PXD044268-1

PXD044268 is an original dataset announced via ProteomeXchange.

Title	Assay for characterizing adsorption-properties of surfaces (APS)
Description	Analytes, from sample preparation, until entering an analytical instrument, are prone to adsorb to surfaces, driven by the chemical properties of the surface and the liquids they are dissolved in. This problem can be addressed with internal standards when a single or few known analytes are quantified that are usually not available in omics. However, minimal to no loss of analytes is the aim. Here, we present a novel assay for qualifying and quantifying interactions responsible for adsorption of molecules to surfaces (APS) by using LC-MS/MS-based differential quantitative analysis. To reflect a broad range of chemical interactions with surfaces, a reference mixture of thousands of tryptic peptides, with known compositions was selected, representing a variety of different chemical characteristics. The assay was tested by investigating the adsorption properties of several different vials with different surface chemistries. A significant number of hydrophobic peptides adsorbed to conventional polypropylene vials. In contrast, only few peptides adsorbed to polypropylene vials, assigned as low-protein-binding. The highest number of peptides adsorbed to glass vials driven by electrostatic interactions. In summary, the new assay is suitable to characterize adsorption properties of different surfaces and to approximate the loss of analytes during sample preparation.
HostingRepository	PRIDE
AnnounceDate	2024-08-30
AnnouncementXML	Submission_2024-08-30_00:36:24.616.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Bente Siebels
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2023-08-01 10:51:31	ID requested
⏵ 1	2024-08-30 00:36:25	announced
2	2024-10-22 06:57:03	announced	2024-10-22: Updated project metadata.

10.1002/CHEM.202403000;

submitter keyword: adsorption, sample loss, surfaces, label-free quantification, LC-MS/MS

Hartmut Schlueter
contact affiliation	Section Mass Spectrometric Proteomics, University Medical Center Hamburg-Eppendorf, Martinistraße 52, 20246 Hamburg, Germany
contact email	h.schlueter@uke.de
lab head
Bente Siebels
contact affiliation	Section for Mass spectrometry and Proteomics, University Medical Center Hamburg-Eppendorf
contact email	b.siebels@uke.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/08/PXD044268

PRIDE project URI

• PRIDE
  1. PXD044268
     1. Label: PRIDE project
     2. Name: Assay for characterizing adsorption-properties of surfaces (APS)