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PXD044263-1

PXD044263 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComparative proteomic identification of Rab GTPase interactors in Arabidopsis
DescriptionRab GTPases are key spatio-temporal regulators of endomembrane trafficking and endomembrane compartment identity across eukaryotes. This therefore makes them ideal targets for study of endomembrane compartment and trafficking pathway composition. In plants, few definitive interactors of Rab GTPases and cargoes of their associated trafficking pathways are known, hindering our understanding of how plants may accomplish and support some unique aspects and requirements of their post-Golgi trafficking systems. The purpose of this work was to identify candidate interactors of different post-Golgi Rab GTPases in Arabidopsis. Co-IPs were performed against tagged-versions of three different post-Golgi Rab GTPases: RAB-A5c, RAB-A2a and RAB-G3f, as well as against control wild-type (Col-0) plants. Comparative ranking of the different proteomes produced candidate interactor lists enriched in possible specific interactors of each Rab GTPase, as well as generic shared interactors. This dataset forms the basis of the characterisation work of several upcoming publications.
HostingRepositoryPRIDE
AnnounceDate2023-09-21
AnnouncementXMLSubmission_2023-09-21_09:01:41.938.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterLiamElliott
SpeciesList scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationListiodoacetamide derivatized residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-08-01 06:34:07ID requested
12023-09-21 09:01:42announced
22023-11-14 07:16:27announced2023-11-14: Updated project metadata.
Publication List
Keyword List
submitter keyword: Arabidopsis, Rab GTPase
Contact List
CharlotteKirchhelle
contact affiliationLaboratoire Reproduction et DÉveloppement des Plantes, ENS de Lyon
contact emailcharlotte.kirchhelle@ens-lyon.fr
lab head
LiamElliott
contact affiliationRDP lab, ENS de Lyon
contact emailliam.elliott@ens-lyon.fr
dataset submitter
Full Dataset Link List
Dataset FTP location
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