PXD044001 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1 |
Description | Tumor microtubes (TMs) connect glioma cells to a network with considerable relevance for tumor progression and therapy resistance. The determination of TM-interconnectivity in individual tumors has been challenging and the impact on patient survival unresolved. Here, a connectivity signature from single-cell RNA-sequenced (scRNA-Seq) xenografted primary glioblastoma (GB) cells has been established using a dye uptake methodology, confirmed with recording of cellular calcium epochs and validated with clinical correlations. Astrocyte-like and mesenchymal-like GB cells have the highest connectivity signature scores in scRNA-sequenced patient-derived xenografts and patient samples. In large GB cohorts, network connectivity correlated with the mesenchymal subtype and dismal patient survival. CHI3L1 has been identified and validated as a robust molecular marker of connectivity with functional relevance. The connectivity signature allows novel insights into brain tumor biology, provides a proof-of-principle that tumor cell TM-connectivity is relevant for patients’ prognosis, and serves as a robust prognostic biomarker. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_06:15:49.540.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Tobias Kessker |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-07-22 04:17:05 | ID requested | |
1 | 2023-11-26 23:52:00 | announced | |
⏵ 2 | 2024-10-22 06:15:49 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: gene expression signature,glioblastoma, connectivity, tumor microtubes, single-cell RNA-sequencing |
Contact List
Wolfgang Wick |
contact affiliation | Heidelberg University Hospital, Department of Neurology |
contact email | wolfgang.wick@med.uni-heidelberg.de |
lab head | |
Tobias Kessker |
contact affiliation | DKFZ Heidelberg |
contact email | t.kessler@dkfz-heidelberg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/11/PXD044001 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD044001
- Label: PRIDE project
- Name: A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1