PXD043218-1

PXD043218 is an original dataset announced via ProteomeXchange.

Title	Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures
Description	Metaproteomics is an increasingly popular methodology that provides information regarding the metabolic functions of specific microbial taxa and can be used to assess environmental stressors and change and has potential for contributing to ocean ecology and biogeochemical studies. To enable future large-scale studies, a multi-laboratory intercomparison was conducted to assess comparability and reproducibility of taxonomic and functional results and their sensitivity to methodological variables. This ocean metaproteomic intercomparison consisted of two major activities: a laboratory component, where independent labs processed identical ocean samples simultaneously collected from the North Atlantic Ocean , and a subsequent informatic component.
HostingRepository	PRIDE
AnnounceDate	2024-05-30
AnnouncementXML	Submission_2024-05-30_12:56:33.186.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD043218
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew McIlvin
SpeciesList	scientific name: Bacteria; NCBI TaxID: NCBITaxon:2; scientific name: environmental samples
ModificationList	acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF; Orbitrap Fusion Lumos; Q Exactive; Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2023-06-22 15:55:33	ID requested
⏵ 1	2024-05-30 12:56:33	announced

10.6019/PXD043218;

submitter keyword: marine,metaproteomics, proteomics, LC-MS, intercomparison, ocean, LCMS

Mak Saito
contact affiliation	Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution
contact email	msaito@whoi.edu
lab head
Matthew McIlvin
contact affiliation	Woods Hole Oceanographic Inst.
contact email	mmcilvin@whoi.edu
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD043218
     1. Label: PRIDE project
     2. Name: Results from a Multi-Laboratory Ocean Metaproteomic Intercomparison: Effects of LC-MS Acquisition and Data Analysis Procedures