PXD042369-1

PXD042369 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Membrane proteomics of Caldalkalibacillus thermarum TA2.A1
Description	Alkaliphilic microorganisms are similar to mesophilic counterparts with exception to membrane proteins. Detection of membrane proteins is difficult due to hydrophobicity and low absolute abundance. Caldalkalibacillus thermarum TA2.A1 is of interest due to growth from pH 7.5 to pH 10. Combination of whole cell lysate proteomics and membrane extracts solubilized with either SDS or FOS-choline-12 detected 158 membrane proteins, including a complete electron transport chain. Additionally, transporters for osmolytes ectoine and glycine betaine were observed.
HostingRepository	PRIDE
AnnounceDate	2023-07-11
AnnouncementXML	Submission_2023-07-11_04:17:09.888.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	MartinPabst
SpeciesList	scientific name: Caldalkalibacillus thermarum TA2.A1; NCBI TaxID: 986075;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-20 18:36:07	ID requested
⏵ 1	2023-07-11 04:17:10	announced
2	2024-10-22 05:53:28	announced	2024-10-22: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: QE plus, Membrane proteome,Caldalkalibacillus thermarum, Shotgun proteomics

submitter keyword: QE plus, Membrane proteome,Caldalkalibacillus thermarum, Shotgun proteomics

Contact List

MartinPabst
contact affiliation	Department of Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands
contact email	m.pabst@tudelft.nl
lab head
MartinPabst
contact affiliation	TUD
contact email	m.pabst@tudelft.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD042369
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD042369

PRIDE project URI

Repository Record List

[ + ]