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PXD042316-1

PXD042316 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePresentation of DNAJB1-PRKACA fusion neoantigens by different HLA class I alleles
DescriptionFibrolamellar carcinoma (FLC) is a liver tumor with a high mortality burden and few treatment options. A promising therapeutic vulnerability in this disease is its highly conserved driver mutation: a gene fusion between DNAJB1 and PRKACA, which is expressed in virtually all FLC tumors and could be an ideal neoantigen target for immunotherapy. In this study, we aimed to define endogenous CD8 T cell responses to this fusion in FLC patients and evaluate fusion-specific T cell receptors (TCRs) as candidates for novel cellular immunotherapies. Although fusion-specific T cells in FLC appear to be rare, we nevertheless defined an endogenous functional T cell response in an FLC patient.
HostingRepositoryPRIDE
AnnounceDate2024-05-24
AnnouncementXMLSubmission_2024-05-24_02:18:09.329.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD042316
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterKirti Pandey
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; deamidated residue
InstrumenttimsTOF Pro 2
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-05-18 02:36:58ID requested
12024-05-24 02:18:10announced
22024-10-22 06:42:45announced2024-10-22: Updated project metadata.
Publication List
10.6019/PXD042316;
Kirk AM, Crawford JC, Chou CH, Guy C, Pandey K, Kozlik T, Shah RK, Chung S, Nguyen P, Zhang X, Wang J, Bell M, Mettelman RC, Allen EK, Pogorelyy MV, Kim H, Minervina AA, Awad W, Bajracharya R, White T, Long D, Gordon B, Morrison M, Glazer ES, Murphy AJ, Jiang Y, Fitzpatrick EA, Yarchoan M, Sethupathy P, Croft NP, Purcell AW, Federico SM, Stewart E, Gottschalk S, Zamora AE, DeRenzo C, Strome SE, Thomas PG, cell responses that potentiate cell therapy for fibrolamellar carcinoma. Cell Rep Med, 5(3):101469(2024) [pubmed]
10.1016/j.xcrm.2024.101469;
Keyword List
submitter keyword: fusion neoantigens, HLA class I, CD8 T cell,DNAJB1-PRKACA, Fibrolamellar carcinoma
Contact List
Anthony Wayne Purcell
contact affiliationDepartment of Biochemistry, Monash University, Clayton,3168, Australia
contact emailanthony.purcell@monash.edu
lab head
Kirti Pandey
contact affiliationMonash University
contact emailkirti.pandey1@monash.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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