PXD042252-1

PXD042252 is an original dataset announced via ProteomeXchange.

Title	Multiplexed Quantitative Analyses Using Data-Dependent Acquisition Without Dynamic Exclusion for trace sample analysis
Description	In this project, we applied our recently developed turboDDA method in the analysis of low amount of sample and iTRAQ labeled trace sample. Compared with standard data-ependent acquisition approach with dynamic exclusion, we detected improvment in spectral purity and quantification accuracy.
HostingRepository	PRIDE
AnnounceDate	2024-01-26
AnnouncementXML	Submission_2024-01-26_09:35:00.927.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ci Wu
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-16 02:28:02	ID requested
⏵ 1	2024-01-26 09:35:02	announced
2	2024-10-22 06:27:07	announced	2024-10-22: Updated project metadata.

10.1021/acs.analchem.3c03357;

Wu C, Lei J, Meng F, Wang X, Wong CJ, Peng J, Lin G, Gingras AC, Ma J, Zhang S, Trace Sample Proteome Quantification by Data-Dependent Acquisition without Dynamic Exclusion. Anal Chem, 95(49):17981-17987(2023) [pubmed]

submitter keyword: turboDDA, iTRAQ

Shen Zhang
contact affiliation	Clinical Reaseach center for Reproduction and Genetics in Hunan Province, Reproductive and Genetic Hospital of CITIC-XIANGYA, Changsha, Hunan, China
contact email	szhang231@126.com
lab head
Ci Wu
contact affiliation	Research specialist
contact email	wuci1111@126.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD042252

PRIDE project URI

• PRIDE
  1. PXD042252
     1. Label: PRIDE project
     2. Name: Multiplexed Quantitative Analyses Using Data-Dependent Acquisition Without Dynamic Exclusion for trace sample analysis