PXD042233-2

PXD042233 is an original dataset announced via ProteomeXchange.

Title	Large collection of HeLa LFQ quality control and maintenance runs
Description	Collection of HeLa maintenance and quality control runs for several years. The dataset was acquired to be used for exploration of deep learning models, initially in the scope of imputation. The repository for this archiv contains hints on how to use the three curated datasets and the single runs as filtered data. It provides links to the files on PRIDE. https://github.com/RasmussenLab/hela_qc_mnt_data The current pre-print of the data descriptor can be found here: https://doi.org/10.21203/rs.3.rs-3083547/v2
HostingRepository	PRIDE
AnnounceDate	2024-01-30
AnnouncementXML	Submission_2024-01-30_06:42:19.687.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Henry Webel
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF; Orbitrap Fusion Lumos; Orbitrap Exploris 480; Q Exactive HF-X; Q Exactive; Q Exactive Plus

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-15 06:13:34	ID requested
1	2023-12-23 08:31:10	announced
⏵ 2	2024-01-30 06:42:21	announced	2024-01-30: Updated project metadata.
3	2024-10-22 06:18:43	announced	2024-10-22: Updated project metadata.

10.1038/s41597-024-02922-z;

Webel H, Perez-Riverol Y, Nielsen AB, Rasmussen S, Mass spectrometry-based proteomics data from thousands of HeLa control samples. Sci Data, 11(1):112(2024) [pubmed]

10.21203/RS.3.RS-3083547/V2;

submitter keyword: Human, LC-MSMS, BigData

Simon Rasmussen
contact affiliation	Novo Nordisk Foundation Center for Protein Research
contact email	simon.rassmussen@cpr.ku.dk
lab head
Henry Webel
contact affiliation	Novo Nordisk Foundation Institut for Protein Research
contact email	henry.webel@cpr.ku.dk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD042233

PRIDE project URI

• PRIDE
  1. PXD042233
     1. Label: PRIDE project
     2. Name: Large collection of HeLa LFQ quality control and maintenance runs