PXD042208-1

PXD042208 is an original dataset announced via ProteomeXchange.

Title	Effect of Flavivirus infections on host cell gene and protein expression
Description	As obligate intracellular parasites, viruses rely heavily on their host cells for their replication, and therefore dysregulate several cellular processes for their benefit. In return, host cells activate multiple signaling pathways to limit viral replication and eradicate viruses. The present study explores the complex interplay between viruses and their host cells through next generation RNA sequencing as well as mass spectrometry (SILAC).
HostingRepository	PRIDE
AnnounceDate	2023-10-24
AnnouncementXML	Submission_2023-10-24_13:24:26.188.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	CarolinBrand
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-13 07:54:26	ID requested
⏵ 1	2023-10-24 13:24:27	announced
2	2023-11-14 09:11:41	announced	2023-11-14: Updated project metadata.
3	2024-10-22 06:12:29	announced	2024-10-22: Updated project metadata.

Brand C, Deschamps-Francoeur G, Bullard-Feibelman KM, Scott MS, Geiss BJ, Bisaillon M, Kunjin Virus, Zika Virus, and Yellow Fever Virus Infections Have Distinct Effects on the Coding Transcriptome and Proteome of Brain-Derived U87 Cells. Viruses, 15(7):(2023) [pubmed]

submitter keyword: human protein expression, Zika,Flavivirus infection, Yellow Fever

MartinBisaillon
contact affiliation	Département de biochimie et de génomique fonctionnelle, Université de Sherbrooke, Sherbrooke, QC, Canada
contact email	martin.bisaillon@usherbrooke.ca
lab head
CarolinBrand
contact affiliation	Université de Sherbrooke
contact email	carolin.brand@usherbrooke.ca
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD042208

PRIDE project URI

• PRIDE
  1. PXD042208
     1. Label: PRIDE project
     2. Name: Effect of Flavivirus infections on host cell gene and protein expression