PXD041913 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | A Peptidisc-based Survey of the Plasma Membrane Proteome of a Mammalian Cell |
| Description | The low abundance and hydrophobicity of plasma membrane proteome relative to soluble proteins makes it difficult to characterize. Here, we apply the peptidisc membrane mimetic to purify the cell membrane proteome. We used HeLa cells as a reference to establish the method, and compared the plasma membrane proteomes between Pancreatic cancer cell Panc-1 and hPSC. |
| HostingRepository | PRIDE |
| AnnounceDate | 2023-11-14 |
| AnnouncementXML | Submission_2023-11-14_09:09:36.031.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Zhiyu Zhao |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | carbamoylated residue; acetylated residue |
| Instrument | LTQ Orbitrap Elite |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2023-05-01 13:47:32 | ID requested | |
| 1 | 2023-10-24 12:33:57 | announced | |
| ⏵ 2 | 2023-11-14 09:09:44 | announced | 2023-11-14: Updated project metadata. |
| 3 | 2024-10-22 06:10:06 | announced | 2024-10-22: Updated project metadata. |
Publication List
| Zhao Z, Khurana A, Antony F, Young JW, Hewton KG, Brough Z, Zhong T, Parker SJ, Duong van Hoa F, A Peptidisc-Based Survey of the Plasma Membrane Proteome of a Mammalian Cell. Mol Cell Proteomics, 22(8):100588(2023) [pubmed] |
Keyword List
| submitter keyword: HeLa, Peptidiscs, Membrane Proteins, hPSC, Panc-1 cells, LC-MS/MS |
Contact List
| Dr Franck Duong |
|---|
| contact affiliation | Biochemistry and molecular biology, Duong lab, University of British Columbia |
| contact email | fduong@mail.ubc.ca |
| lab head | |
| Zhiyu Zhao |
|---|
| contact affiliation | University of British Columbia |
| contact email | zhiyuz@student.ubc.ca |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD041913 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD041913
- Label: PRIDE project
- Name: A Peptidisc-based Survey of the Plasma Membrane Proteome of a Mammalian Cell
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