PXD041908-1

PXD041908 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Targeting APEX2 to the mRNA encoding fatty acid synthase β in yeast identifies proteins that bind and control its translational efficiency in the cell cycle
Description	To understand how the translation of FAS1, encoding fatty acid synthase, peaks late in the cell cycle, we identified proteins that bind the FAS1 transcript in a cell cycle-dependent manner. We used dCas13d-APEX2 fusions to target FAS1 and label nearby proteins, which were then identified by mass spectrometry.
HostingRepository	PRIDE
AnnounceDate	2024-05-24
AnnouncementXML	Submission_2024-05-24_02:39:43.393.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Polymenis
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-05-01 09:52:08	ID requested
⏵ 1	2024-05-24 02:39:44	announced
2	2024-10-22 06:42:33	announced	2024-10-22: Updated project metadata.

Publication List

10.1091/mbc.e23-05-0166;
Blank HM, Griffith WP, Polymenis M, in yeast identifies interacting proteins that control its abundance in the cell cycle. Mol Biol Cell, 34(13):br20(2023) [pubmed]

10.1091/mbc.e23-05-0166;

Blank HM, Griffith WP, Polymenis M, in yeast identifies interacting proteins that control its abundance in the cell cycle. Mol Biol Cell, 34(13):br20(2023) [pubmed]

Keyword List

submitter keyword: yeast
LC-MS/MS
proximity labeling

submitter keyword: yeast

LC-MS/MS

proximity labeling

Contact List

Michael Polymenis
contact affiliation	Department of Biochemistry and Biophysics Texas A&M University
contact email	polymenis@tamu.edu
lab head
Michael Polymenis
contact affiliation	Texas A&M University
contact email	polymenis@tamu.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD041908
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/05/PXD041908

PRIDE project URI

Repository Record List

[ + ]