PXD040972-2

PXD040972 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic analysis chain-elongating microorganisms
Description	The study by Allaart et al. (2023) investigates whether different environmental conditions can alter chain-elongating microbial communities to exhibit different catabolic stoichiometries. In support of the study, we provide whole-cell lysate shotgun proteomics data that compare the tested conditions. Contact: M.T.Allaart@tudelft.nl
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:09:31.625.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Pabst
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-20 02:48:04	ID requested
1	2023-10-24 12:17:41	announced
⏵ 2	2023-11-14 09:09:40	announced	2023-11-14: Updated project metadata.
3	2024-10-22 06:09:47	announced	2024-10-22: Updated project metadata.

Publication List

Allaart MT, Fox BB, Nettersheim IHMS, Pabst M, Sousa DZ, Kleerebezem R, Physiological and stoichiometric characterization of ethanol-based chain elongation in the absence of short-chain carboxylic acids. Sci Rep, 13(1):17370(2023) [pubmed]

Allaart MT, Fox BB, Nettersheim IHMS, Pabst M, Sousa DZ, Kleerebezem R, Physiological and stoichiometric characterization of ethanol-based chain elongation in the absence of short-chain carboxylic acids. Sci Rep, 13(1):17370(2023) [pubmed]

Keyword List

submitter keyword: chain-elongation, shotgun proteomics, label free quantification,Clostridium kluyveri

submitter keyword: chain-elongation, shotgun proteomics, label free quantification,Clostridium kluyveri

Contact List

Martin Pabst
contact affiliation	Department of Biotechnology, Delft University of Technology, The Netherlands.
contact email	m.pabst@tudelft.nl
lab head
Martin Pabst
contact affiliation	TUD
contact email	m.pabst@tudelft.nl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD040972
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD040972

PRIDE project URI

Repository Record List

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