PXD040783-1

PXD040783 is an original dataset announced via ProteomeXchange.

Title	The RBPome of influenza A virus mRNA reveals a role for TDP-43 in viral replication
Description	Recent technical advances have resulted in a significant increase in our understanding of the RNA-binding protein (RBP) repertoire present within eukaryotic cells. A particular focus has been on the RBPs that interact with cellular polyadenylated mRNAs. However, recent studies utilising the same technologies have begun to tease apart the RBP interactome of viral mRNAs, most notably SARS-CoV-2, demonstrating clear similarities but also differences between the RBP profiles of viral and cellular mRNAs. Herein, for the first time we comprehensively mapped the RBPs that associate with the NP mRNA of an influenza A virus. Moreover, we provide evidence that the viral polymerase is essential for the recruitment of RPBs to viral mRNAs through direct polymerase-RBP interactions during transcription. We show that loss of TDP-43, that associates with the viral mRNA, results in a decrease in viral mRNA availability within infected cells, with an impact on the accumulation of viral genomic RNA and the yield of infectious viral particles. Overall, we uncover an important role for TDP-43 in the influenza A virus replication cycle via a direct interaction with viral mRNAs and we demonstrate an essential role of the viral polymerase in orchestrating the assembly of viral mRNPs.
HostingRepository	PRIDE
AnnounceDate	2024-04-16
AnnouncementXML	Submission_2024-04-16_06:18:33.021.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Thibaut Douché
SpeciesList	scientific name: Influenza A virus (A/WS/1933(H1N1)); NCBI TaxID: 382834; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	L-methionine sulfoxide; N-acylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2023-03-10 20:54:53	ID requested
⏵ 1	2024-04-16 06:18:33	announced
2	2024-10-22 06:36:11	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: Q Exactive HF, TMT10plex, eRIC protocol, RNA-binding protein,influenza A virus

Nadia Naffakh
contact affiliation	Institut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, Paris, France
contact email	nadia.naffakh@pasteur.fr
lab head
Thibaut Douché
contact affiliation	Institut Pasteur
contact email	thibaut.douche@pasteur.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/04/PXD040783

PRIDE project URI

• PRIDE
  1. PXD040783
     1. Label: PRIDE project
     2. Name: The RBPome of influenza A virus mRNA reveals a role for TDP-43 in viral replication