PXD040247 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Secretome analysis revealed amylases and peroxidases as markers of the early stages of somatic embryogenesis in Pinus nigra |
Description | Micropropagation of valuable conifer trees via somatic embryogenesis is efficient for rapid multiplication and preservation of germplasm. Suspension cell cultures are valuable tools to study extracellular proteins secreted into liquid cultivation medium, avoiding contamination from destructured cells. Extracellular proteins are essential regulators of somatic embryogenesis. Using a proteomic approach, we performed a pioneering study of the secretome of Pinus nigra cell lines with contrasting embryogenic capacity, accounting for variability between genotypes. Besides proteins affecting cell wall strength, such as four peroxidases and extensin, amylase and two basic secretory proteins accumulated in the medium from cell lines with high embryogenic capacity. In the medium of cell lines with low embryogenic capacity nuclease S1 and proteases were more abundant. These proteins are potentially involved in programmed cell death and nutrient recycling. Furthermore, two polygalacturonases and expansin correlated with microscopic observations. Validating proteomic findings, we tested the peroxidase and amylase activity in the medium of several cell lines. We concluded that both tested enzyme activities may be considered potential markers of high embryogenic capacity. |
HostingRepository | PRIDE |
AnnounceDate | 2023-07-28 |
AnnouncementXML | Submission_2023-07-28_01:59:29.225.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | MaksymDanchenko |
SpeciesList | scientific name: Pinus nigra; NCBI TaxID: 58042; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-02-18 01:55:16 | ID requested | |
⏵ 1 | 2023-07-28 01:59:29 | announced | |
2 | 2023-11-14 06:46:27 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
submitter keyword: peroxidases, polygalacturonases, cell wall, black pine,extracellular proteome, amylases |
Contact List
PeterBaráth |
contact affiliation | Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences |
contact email | peter.barath@savba.sk |
lab head | |
MaksymDanchenko |
contact affiliation | Plant Science and Biodiversity Center SAS |
contact email | maxymdan@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD040247
- Label: PRIDE project
- Name: Secretome analysis revealed amylases and peroxidases as markers of the early stages of somatic embryogenesis in Pinus nigra