PXD039749

PXD039749 is an original dataset announced via ProteomeXchange.

Title	Validation of protein expression in kidney tissue of Labeo rohita during Edwardsiella tarda infection
Description	In this study, we examined the kidney proteome of Labeo rohita infected intraperitoneally with Edwardsiella tarda (Et). A comparative proteomic analysis of Control and Et infected kidney fwas performed. High-resolution mass spectrometry was used for gut data using label-free quantification. Discovery based proteomics data could identify a panel of differentially expressed proteins (DEPs) between Control and ET condition (Et infected group). Protein abundance changes in a few selected DEPs was then validated using selected/multiple reaction monitoring (S/MRM) approach.
HostingRepository	PanoramaPublic
AnnounceDate	2024-08-01
AnnouncementXML	Submission_2024-08-01_11:01:10.367.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Medha Gayathri J Pai
SpeciesList	scientific name: Labeo rohita; NCBI TaxID: 84645; scientific name: Edwardsiella tarda; NCBI TaxID: 636;
ModificationList	Carbamidomethyl
Instrument	TSQ Altis

Revision	Datetime	Status	ChangeLog Entry
0	2023-01-31 11:24:22	ID requested
⏵ 1	2024-08-01 11:01:10	announced

Pinto N, Nissa MU, Yashwanth BS, Sathiyanarayanan A, Pai MGJ, Srivastava S, Goswami M. Proteomics analysis of differentially abundant proteins in the rohu kidney infected with Edwardsiella tarda. Comp Biochem Physiol Part D Genomics Proteomics. 2024 Jun;50:101221. doi: 10.1016/j.cbd.2024.101221. Epub 2024 Feb 26. PMID: 38430708.

submitter keyword: Edwardsiella tarda, kidney proteomics, mass spectrometry, rohu, SRM

Sanjeeva Srivastava
contact affiliation	BSBE, IIT Bombay
contact email	sanjeeva@iitb.ac.in
lab head
Medha Gayathri J Pai
contact affiliation	BSBE, IIT Bombay
contact email	mgjpai@gmail.com
dataset submitter

Panorama Public dataset URI