PXD039399 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Yeast calibration curve dataset |
Description | The yeast calibration curve dataset was acquired to compare the accuracy of DIA tools with decreasing contents of target peptides. Four samples (Y1, Y2, Y3 and Y4) with decreasing contents (200, 100, 50 and 25 ng, respectively) of analytes (yeast tryptic peptides) and a high content of background peptides (800 ng human tryptic peptides constantly) were analyzed in triplicate using LC-DIA-MS/MS. The DIA data were processed by different DIA tools based on the spectral library generated from the DDA data. The accuracy of different DIA tools was compared. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_07:26:37.486.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Binjun Yan |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2023-01-13 06:03:21 | ID requested | |
1 | 2023-10-25 05:28:42 | announced | |
⏵ 2 | 2023-11-14 07:26:37 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: LC-MS/MS, Accuracy, Calibration curve, Human, Yeast, Benchmark |
Contact List
B. Yan |
contact affiliation | Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences |
contact email | ybinjun@126.com |
lab head | |
Binjun Yan |
contact affiliation | Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences |
contact email | ybinjun@126.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD039399 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD039399
- Label: PRIDE project
- Name: Yeast calibration curve dataset