<<< Full experiment listing

PXD039339-1

PXD039339 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleTissue expression of N-terminal proteoforms.
DescriptionTo evaluate the expression of N-terminal proteoforms (protein isoforms with different N-terminus expressed from the same gene) in healthy human tissues, we re-analyzed public proteomics data of the draft map of the human proteome developed by the Pandey group (PRIDE project PXD000561). Using ionbot search engine and a custom-build protein sequence database (composed of UniProt and Ribo-seq derived proteoforms) we confirmed that N-terminal proteoforms are not only expressed in histologically healthy human tissues, but also display tissue specificity.
HostingRepositoryPRIDE
AnnounceDate2023-06-12
AnnouncementXMLSubmission_2023-06-12_10:01:45.606.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterDariaFijalkowska
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListacetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos; LTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-01-09 07:37:45ID requested
12023-06-12 10:01:46announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: proteoforms, healthy tissue,human
Contact List
Prof. Dr. KrisGevaert
contact affiliationPrincipal Investigator and Associate Director – VIB-UGent Center for Medical Biotechnology, Belgium Head of Department – UGent Department of Biomolecular Medicine, Belgium
contact emailkris.gevaert@vib-ugent.be
lab head
DariaFijalkowska
contact affiliationVIB-UGent Center for Medical Biotechnology
contact emaildaria.fijalkowska@vib-ugent.be
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/06/PXD039339
PRIDE project URI
Repository Record List
[ + ]