PXD038809 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Elucidating the RNA-protein Interactomes of Target RNAs in Tissue |
Description | Raw mass spec files for the protein interactomes of MALAT1, polyadenylated RNA, and scrambled controls in mouse liver and patient derived prostate tumor xenografts XG147 and XG77 as determined by HyPR-MS. |
HostingRepository | PRIDE |
AnnounceDate | 2023-07-30 |
AnnouncementXML | Submission_2023-07-30_15:39:29.918.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | IsabellaWhitworth |
SpeciesList | scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-12-13 22:54:59 | ID requested | |
⏵ 1 | 2023-07-30 15:39:30 | announced | |
2 | 2023-11-14 09:04:30 | announced | 2023-11-14: Updated project metadata. |
Publication List
Whitworth IT, Henke KB, Yang B, Scalf M, Frey BL, Jarrard DF, Smith LM, Elucidating the RNA-Protein Interactomes of Target RNAs in Tissue. Anal Chem, 95(18):7087-7092(2023) [pubmed] |
Keyword List
submitter keyword: MALAT1,proteomics, mass spectrometry, hybridization, lncRNA, RNA metabolism, interactome, RNA binding proteins |
Contact List
Lloyd MSmith |
contact affiliation | Department of Chemistry |
contact email | smith@chem.wisc.edu |
lab head | |
IsabellaWhitworth |
contact affiliation | University of Wisconsin-Madison |
contact email | iwhitworth@wisc.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD038809 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD038809
- Label: PRIDE project
- Name: Elucidating the RNA-protein Interactomes of Target RNAs in Tissue