⮝ Full datasets listing

PXD038743-2

PXD038743 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleAnalysis of the protein distribution within the wheat endosperm
DescriptionStarchy endosperm proteins determine wheat quality and exhibit, besides a quantitative protein gradient, a qualitative protein gradient from the outer to inner starchy endosperm. The goal was to investigate the relative differences in protein composition between the aleurone, sub-aleurone and inner endosperm. Using laser microdissection followed by nanoLC-MS/MS, an innovative method combining a high spatial specificity and analytical selectivity in sample-limited situations, 780 proteins were detected and classified by function. Relatively more gluten proteins were detected in the sub-aleurone compared to inner endosperm. Gluten composition-wise, the sub-aleurone is relatively more enriched in ω-gliadins, but impoverished in LMW-GS and γ-gliadins. While a basic set of albumins and globulins is detected across the entire endosperm, some proteins, like puroindoline-B, display an increasing (or decreasing) gradient. Histological origin and relative positioning of the endosperm cells are hypothesized to drive the protein gradient. Knowledge on this gradient provides major opportunities for the wheat manufacturing industry.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_06:17:46.254.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSabrina Geisslitz
SpeciesList scientific name: Triticum aestivum (Wheat); NCBI TaxID: 4565;
ModificationListiodoacetamide derivatized residue
InstrumentQ Exactive Plus
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-12-12 04:57:01ID requested
12023-12-14 23:25:10announced
22024-10-22 06:17:46announced2024-10-22: Updated project metadata.
Publication List
10.1016/J.FOODCHEM.2023.137735;
Keyword List
submitter keyword: Triticum aesticum,nanoLC-MS/MS, sub-aleurone, inner endosperm, laser microdessected, aleurone
Contact List
Katharina Anne Scherf
contact affiliationDepartment of Bioactive and Functional Food Chemistry, Institute of Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
contact emailkatharina.scherf@kit.edu
lab head
Sabrina Geisslitz
contact affiliationDepartment of Bioactive and Functional Food Chemistry, Institut of Applied Biosciences, Karlsruhe Institut of Technology
contact emailsabrina.geisslitz@kit.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/12/PXD038743
PRIDE project URI
Repository Record List
[ + ]