PXD037565 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Polyethylene terephthalate and its monomers degradation by Ideonella sakaiensis (secreted) |
Description | Synthetic plastics, like polyethylene terephthalate (PET), have become an essential part of modern life. Many of these products are remarkably persistent in the environment, and the accumulation in the environment is recognised as a major threat. Therefore, an increasing interest has been paid to screen for organisms able to degrade and assimilate the plastic. Ideonella sakaiensis was isolated from a plastisphere, a bacterium that solely was thriving on the degradation on PET films. The processes affected by the presence of PET, terephthalic acid, ethylene glycol, ethyl glycolate, and sodium glyoxylate monohydrate was elucidated by differential proteomes. The exposure of PET and its monomers seem to affect two major pathways, the TCA cycle and the β-oxidation pathway, since multiple of the conditions resulted in an increased expression of proteins directly or indirectly involved in these pathways, underlying the importance in the degradation of PET by I. sakaiensis. |
HostingRepository | PRIDE |
AnnounceDate | 2023-04-04 |
AnnouncementXML | Submission_2023-04-04_02:16:30.068.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD037565 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Jan StruckmannPoulsen |
SpeciesList | scientific name: Ideonella sakaiensis; NCBI TaxID: 1547922; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-10-19 03:06:11 | ID requested | |
⏵ 1 | 2023-04-04 02:16:30 | announced | |
2 | 2023-11-14 08:58:19 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
submitter keyword: Ideonella sakaiensis,Plastic degrader, proteomics, polyethylene terephthalate, β-oxidation, ethylene glycol, polyhydroxyalkanoate, terephthalic acid |
Contact List
Jeppe LundNielsen |
contact affiliation | Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, 9220 Aalborg E, Denmark |
contact email | jln@bio.aau.dk |
lab head | |
Jan StruckmannPoulsen |
contact affiliation | Aalborg University |
contact email | jsp@bio.aau.dk |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD037565
- Label: PRIDE project
- Name: Polyethylene terephthalate and its monomers degradation by Ideonella sakaiensis (secreted)