PXD037384 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative Proteomics of Enriched Esophageal and Gut Tissues from the Human Blood Fluke Schistosoma mansoni |
Description | Schistosomes are blood-dwelling helminth parasites causing a debilitating disease in the tropics. Major challenges to control persist and vaccines would provide an additional tool, but finding protective antigens is not trivial. It's known that the self-cure response of Rhesus macaques targets proteins from the tegument, gut and esophagus, the last of which is the least investigated. Here we applied proteomics to characterise esophageal antigens with potential utility for vaccine development. This dataset was generated by partial reanalysis of our published MS-data (PXD014872; 10.1021/acs.jproteome.9b00531). Originally, we have shown that shotgun proteomics applied to dissected esophageal fragments identified 13 MEG proteins, eleven of which are uniquely located in the esophageal glands. Antigenic variation by alternative splicing of MEG proteins was confirmed together with a specialised machinery for protein glycosylation in the esophagus. Moreover some gastrodermal secretions were highly enriched in the gut, while others were more uniformly distributed, potentially as markers of lysosomal activity. In contrast to PXD014872, this reanalysis allowed semi-specific trypsin cleavage during database search. This has proven to increase N-terminal sequence coverage of proteins processed for signal peptide removal, including esophageal MEG proteins. |
HostingRepository | PRIDE |
AnnounceDate | 2024-06-20 |
AnnouncementXML | Submission_2024-06-20_03:22:25.539.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD037384 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Leandro Neves |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-10-13 14:55:02 | ID requested | |
⏵ 1 | 2024-06-20 03:22:25 | announced | |
Publication List
Keyword List
submitter keyword: microexon genes,Schistosoma mansoni, esophageal gland |
Contact List
William de Castro Borges |
contact affiliation | Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil |
contact email | wborges@ufop.edu.br |
lab head | |
Leandro Neves |
contact affiliation | Postdoctoral researcher at Brazilian National Biosciences Laboratory (LNBio), CNPEM, Campinas, Brazil |
contact email | leandroxneves@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD037384
- Label: PRIDE project
- Name: Quantitative Proteomics of Enriched Esophageal and Gut Tissues from the Human Blood Fluke Schistosoma mansoni