PXD037303-1
PXD037303 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Integrative analysis of proteomics and transcriptomics of longissimus dorsi of the Different Feeding Systems the Yaks |
Description | The yak (Bos grunniens) is a critical livestock breed in the plateau region, and changing the feeding system can significantly improve the growth performance of yaks. In this study, the effects of different feeding regimes on growth performance and the meat quality of yaks were comprehensively compared. The transcriptome and proteome of longissimus dorsi muscle were studied by RNA-seq and TMT techniques. Our study found that indoor feeding significantly improved the yak growth performance (such as the average daily gain and net meat) and meat quality level compared with traditional grazing feeding. In the grazing (Group G) vs. stabling groups (Group HF) yak comparison, 40 DEGs/DAPs showed the same mRNA and protein expression trends. These genes are associated with collagen binding, lipoxygenase pathway, and arachidonic acid metabolic process.PRM verified the reliability of the TMT results. Moreover, some pathways such as the "AMPK signaling pathway," "FoxO signaling pathway," "PPAR signaling pathway," and "Fatty acid metabolism" were significantly enriched in this study. These results expand our knowledge of meat quality in yak and provide practical information and more evidence for further insight into the biological mechanisms of meat quality traits. |
HostingRepository | iProX |
AnnounceDate | 2022-10-11 |
AnnouncementXML | Submission_2022-10-11_20:15:47.964.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xiaoming Ma |
SpeciesList | scientific name: Bos grunniens; NCBI TaxID: 30521; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2022-10-11 20:15:33 | ID requested | |
⏵ 1 | 2022-10-11 20:15:48 | announced |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Yak, Longissimus Dorsi muscle, Meat quality, RNA-sequencing. TMT proteomics |
Contact List
Chunnian Liang | |
---|---|
contact affiliation | Chinese Academy of Agricultural Sciences |
contact email | liangchunnian@caas.cn |
lab head | |
Xiaoming Ma | |
contact affiliation | Chinese Academy of Agricultural Sciences |
contact email | maxiaoming@caas.cn |
dataset submitter |
Full Dataset Link List
iProX dataset URI |