PXD037203-1

PXD037203 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Newly synthesized glycoproteins during ex vivo lung perfusion
Description	Proteins that were newly-synthesized during ex vivo lung perfusion were labeled with an azido-sugar Ac4GalNAz in the perfusate. These proteins were enriched using click chemistry to attach an alkyne-desthiobiotin group to the azido-labeled proteins, then pulled out of solution using streptavidin beads. The overall goal is to better understand the effects of warm ischemia injury in lungs destined for lung transplantation.
HostingRepository	MassIVE
AnnounceDate	2023-05-04
AnnouncementXML	Submission_2023-05-04_07:46:26.390.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Brian Frey
SpeciesList	scientific name: Rattus norvegicus; common name: Norway rat; NCBI TaxID: 10116;
ModificationList	Acetyl; Methyl; Phospho; Carbamidomethyl; Oxidation; Deamidated; L-citrulline; Formyl; Glu->pyro-Glu; Dehydrated; Butyryl; Dimethyl; Trimethyl; Carboxy; HexNAc
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-07 11:54:27	ID requested
⏵ 1	2023-05-04 07:46:26	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: Lung Proteomics, Ex Vivo Lung Perfusion, Lung Transplantation, Warm Ischemia Injury, Azido Sugar, GalNAz, Click Chemistry, Newly Synthesized Proteins

submitter keyword: Lung Proteomics, Ex Vivo Lung Perfusion, Lung Transplantation, Warm Ischemia Injury, Azido Sugar, GalNAz, Click Chemistry, Newly Synthesized Proteins

Contact List

Brian L. Frey
contact affiliation	University of Wisconsin - Madison
contact email	bfrey@chem.wisc.edu
lab head
Brian Frey
contact affiliation	University of Wisconsin Madison
contact email	bfrey@chem.wisc.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000090491/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000090491/