PXD037185-1

PXD037185 is an original dataset announced via ProteomeXchange.

Title	: Proteomic analysis of Nicotiana benthamiana upon infection of grapevine fanleaf virus strains
Description	Nicotiana benthamiana was infected with several strains of grapevine fanleaf virus (GFLV). Apical tissue was collected 4, 7, and 12 days after inoculation, with identical samples for shotgun proteomics and transcriptomics analysis. Five leaf discs per leaf were collected a pooled by three plants into a single tube at each time point. Five biological replicates represent each treatment at each time point for a total of 75 samples. Two samples were lost between sample processing and data acquisition. The analysis methods between proteomics and transcriptomics were then cross-analyzed for host genes responsible for phenotypic differences upon infection.
HostingRepository	PRIDE
AnnounceDate	2023-07-20
AnnouncementXML	Submission_2023-07-20_11:37:57.481.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD037185
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	BrandonRoy
SpeciesList	scientific name: Nicotiana benthamiana; NCBI TaxID: 4100;
ModificationList	methylthiolated residue; monohydroxylated residue; deamidated residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2022-10-05 00:50:21	ID requested
⏵ 1	2023-07-20 11:37:58	announced
2	2023-11-14 09:03:35	announced	2023-11-14: Updated project metadata.

10.6019/PXD037185;

Roy BG, DeBlasio S, Yang Y, Thannhauser T, Heck M, Fuchs M, Profiling Plant Proteome and Transcriptome Changes during Grapevine Fanleaf Virus Infection. J Proteome Res, 22(6):1997-2017(2023) [pubmed]

submitter keyword: tobacco, virus, grapevine, plant,LC-MSMS

MichelleHeck
contact affiliation	Michelle Heck, USDA-ARS, Emerging Pests and Pathogens Research Unit, Holly Center, Ithaca, NY, USA
contact email	Michelle.Cilia@USDA.gov
lab head
BrandonRoy
contact affiliation	Cornell University, Section of Plant Pathology
contact email	bgr36@cornell.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD037185

PRIDE project URI

• PRIDE
  1. PXD037185
     1. Label: PRIDE project
     2. Name: : Proteomic analysis of Nicotiana benthamiana upon infection of grapevine fanleaf virus strains