PXD037097-2

PXD037097 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomics,N-glycoproteomics and Phosphoproteomics of SARS-Cov-2 Infected Calu-3 Cells
Description	We present an multiple proteomics study of SARS-Cov-2 infection to comprehensively decipher the changes in host cells in response to viral infection, including global proteomics, N-glycoproteomics and phosphoproteomics.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_06:25:35.688.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Rui Chen
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue; deamidated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-09-30 03:57:24	ID requested
1	2024-01-26 06:43:03	announced
⏵ 2	2024-10-22 06:25:41	announced	2024-10-22: Updated project metadata.

Publication List

10.1016/j.mcpro.2023.100645;
Chen R, Fulton KM, Tran A, Duque D, Kovalchik K, Caron E, Twine SM, Li J, Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation. Mol Cell Proteomics, 22(10):100645(2023) [pubmed]

10.1016/j.mcpro.2023.100645;

Chen R, Fulton KM, Tran A, Duque D, Kovalchik K, Caron E, Twine SM, Li J, Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation. Mol Cell Proteomics, 22(10):100645(2023) [pubmed]

Keyword List

ProteomeXchange project tag: Sars-cov-2, Covid-19
submitter keyword: SARS-Cov-2, Calu-3

ProteomeXchange project tag: Sars-cov-2, Covid-19

submitter keyword: SARS-Cov-2, Calu-3

Contact List

Rui Chen
contact affiliation	Human Health Therapeutics Research Centre, National Research Council Canada
contact email	Rui.Chen@nrc-cnrc.gc.ca
lab head
Rui Chen
contact affiliation	National Research Council Canada
contact email	Rui.Chen@nrc-cnrc.gc.ca
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD037097
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/01/PXD037097

PRIDE project URI

Repository Record List

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