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PXD036040-1

PXD036040 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleRecognition of DNA damage lesions across the tree of life
DescriptionProtecting the integrity of their genome is critical to all species. The surveillance and maintenance of the genome of every organism is orchestrated by a highly regulated combination of DNA damage response and specific DNA repair pathways. Two of these critical pathways are base excision repair (BER) and ribonucleotide excision repair (RER). Here, we investigate the phylogenetic diversity in the recognition and repair of three well-established DNA lesions, primarily repaired by BER or RER: 1) 8-oxoguanine, 2) an abasic site, and 3) incorporated ribonucleotide in DNA in E. coli, B. subtilis, H. salinarum, T. brucei, T. thermophila, S. cerevisiae, S. pombe, C. elegans, human HeLa and HEK293 cells, A. thaliana, and Z. mays. Using quantitative mass spectrometry, we identified 337 enriched interactors across these species. Of these proteins, 140 were previously characterized to be involved in DNA repair, and 39 proteins were newly identified due to their homology to previously studied repair proteins. For 10 of the 11 species, we identify unique, uncharacterized proteins that lack homology to any protein within the included 11 species. Our study emphasizes strong crosstalk between RER and BER and highlights the evolutionary conservation of this cross recognition across all domains of life.
HostingRepositoryPRIDE
AnnounceDate2023-07-20
AnnouncementXMLSubmission_2023-07-20_12:36:49.916.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterFButter
SpeciesList scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; scientific name: Halobacterium salinarum; NCBI TaxID: 2242; scientific name: Trypanosoma brucei; NCBI TaxID: 5691; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Zea mays (Maize); NCBI TaxID: 4577; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02022-08-12 13:39:14ID requested
12023-07-20 12:36:51announced
22023-11-14 09:03:58announced2023-11-14: Updated project metadata.
32024-10-22 05:56:53announced2024-10-22: Updated project metadata.
Publication List
Nischwitz E, Schoonenberg VAC, Fradera-Sola A, Dejung M, Vydzhak O, Levin M, Luke B, Butter F, Scheibe M, DNA damage repair proteins across the Tree of Life. iScience, 26(6):106778(2023) [pubmed]
Keyword List
submitter keyword: LC-MS/MS
Contact List
FalkButter
contact affiliationInstitute of Molecular Biology (IMB)
contact emailf.butter@imb.de
lab head
FButter
contact affiliationQuantitative Proteomics Institute of Molecular Biology (IMB)
contact emailf.butter@imb-mainz.de
dataset submitter
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Dataset FTP location
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PRIDE project URI
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