PXD035844-2

PXD035844 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Utilising crosslinking MS to explore protein structure and interactions
Description	In this study, we performed proteome-wide crosslinking mass spectrometry (XLMS) on human HEK293 intact organelles and examined the combined utility of these crosslinks with AlphaFold.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:45:03.898.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jason Low
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion ETD; Q Exactive HF-X

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-08-07 03:05:53	ID requested
1	2023-04-24 07:17:21	announced
⏵ 2	2023-11-14 08:45:12	announced	2023-11-14: Updated project metadata.

Publication List

Bartolec TK, V, á, zquez-Campos X, Norman A, Luong C, Johnson M, Payne RJ, Wilkins MR, Mackay JP, Low JKK, Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell. Proc Natl Acad Sci U S A, 120(17):e2219418120(2023) [pubmed]

Bartolec TK, V, á, zquez-Campos X, Norman A, Luong C, Johnson M, Payne RJ, Wilkins MR, Mackay JP, Low JKK, Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein-protein interactions in the human cell. Proc Natl Acad Sci U S A, 120(17):e2219418120(2023) [pubmed]

Keyword List

submitter keyword: XLMS, Crosslinking MS, AlphaFold,Crosslinking

submitter keyword: XLMS, Crosslinking MS, AlphaFold,Crosslinking

Contact List

Jason Low
contact affiliation	School of Life and Environmental Sciences, The University of Sydney, Australia
contact email	Jason.low@sydney.edu.au
lab head
Jason Low
contact affiliation	The University of Sydney
contact email	jason.low@sydney.edu.au
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD035844
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/04/PXD035844

PRIDE project URI

Repository Record List

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