PXD035161-1

PXD035161 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Sarikaya_HistoryMyopathy_P124_Lumos
Description	This dataset consists of 3 raw MS files, acquired on Orbitrap Fusion Lumos Tribrid mass spectrometer operated in Data Dependent Acquisition mode. Cells and lysates were generated by Jonathan Volpatti. Sample processing and mass spectrometry acquisition was performed by Cassandra Wong. Data analysis was performed by Cassandra Wong and Jonathan Volpatti. The files are associated with a manuscript submitted for publication by Jonathan Volpatti et al. The paper performed a natural history study of Mtm1 KO mice to better understand XLMTM disease pathomechanisms. James J. Dowling is the corresponding author of the manuscript (james.dowling@sickkids.ca); Karen Colwill should be contacted for questions on this dataset (colwill@lunenfeld.ca) This submission is associated with 7 Supplementary File (in addition to this README file) Table 1 describes the composition of this dataset Table 2, 4, 6 describe all evidence for cytoplasm, membrane and nucleus fractions respectively Table 3, 5, 7 describe only peptide level analysis for cytoplasm, membrane and nucleus fractions respectively
HostingRepository	MassIVE
AnnounceDate	2022-07-07
AnnouncementXML	Submission_2022-07-07_10:23:12.283.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Karen Colwill
SpeciesList	scientific name: Mus musculus; common name: house mouse; NCBI TaxID: 10090;
ModificationList	deamidated L-asparagine; deamidated L-glutamine; L-methionine sulfoxide; Acetyl; TMT6plex; CarbamidomethylDTT
Instrument	Orbitrap Fusion Lumos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-07-07 09:56:31	ID requested
⏵ 1	2022-07-07 10:23:12	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: X-linked myotubular myopathy, MTM1, Subcellular fractionation

submitter keyword: X-linked myotubular myopathy, MTM1, Subcellular fractionation

Contact List

Karen Colwill
contact affiliation	LTRI
contact email	colwill@lunenfeld.ca
lab head
Karen Colwill
contact affiliation	Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital
contact email	colwill@lunenfeld.ca
dataset submitter

Full Dataset Link List

MassIVE dataset URI
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000089841/

MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000089841/