PXD034989 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Fish coelomic fluid proteomic analysis by LC-MSMS |
Description | The aim of this study was to complete and fully characterize the proteome of rainbow trout coelomic fluid (CF). Furthermore, we intended to identify the proteins responsible for the extension of egg viability in salmonids coelomic fluid. For this, the proteomic composition of different salmonids CF and non-salmonids CF were compared to identify proteins specifically present in salmonids CF. Those proteins could be responsible for the egg conservation property of the salmonids CF. In parallel, rainbow trout CF has been fractionated using HPLC coupled to gel filtration or ion exchange columns. We have then tested the egg conservation properties of the different fractions obtained. Proteins present in the fractions allowing egg quality preservation were identified. Identifying the CF components involved in egg viability would have important applied outputs with various biotechnological applications for aquaculture. It could help understanding egg quality preservation mechanisms, and consequently improving egg storage condition. |
HostingRepository | PRIDE |
AnnounceDate | 2024-05-21 |
AnnouncementXML | Submission_2024-05-21_12:37:19.840.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD034989 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Aurelie Gueho |
SpeciesList | scientific name: Cyprinus carpio (Common carp); NCBI TaxID: 7962; scientific name: Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri); NCBI TaxID: 8022; scientific name: Carassius auratus; NCBI TaxID: 7957; scientific name: Sander lucioperca; NCBI TaxID: 283035; scientific name: Salmo salar (Atlantic salmon); NCBI TaxID: 8030; scientific name: Acipenser gueldenstaedtii; NCBI TaxID: 7902; scientific name: Salmo trutta; NCBI TaxID: 8032; scientific name: Acipenser baerii; NCBI TaxID: 27689; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-06-30 03:03:05 | ID requested | |
⏵ 1 | 2024-05-21 12:37:20 | announced | |
Publication List
10.1038/s41598-024-60118-2; |
10.6019/PXD034989; |
Gueho A, Ż, arski D, Rime H, Gu, é, vel B, Com E, Lavigne R, Nguyen T, Montfort J, Pineau C, Bobe J, Evolutionarily conserved ovarian fluid proteins are responsible for extending egg viability in salmonid fish. Sci Rep, 14(1):9651(2024) [pubmed] |
Keyword List
submitter keyword: LC-MSMS,fish, coelimic fluid |
Contact List
Julien Bobe |
contact affiliation | UR1037 – Laboratoire de Physiologie et Génomique des Poissons (LPGP), INRAE, France |
contact email | julien.bobe@inrae.fr |
lab head | |
Aurelie Gueho |
contact affiliation | Rennes 1 |
contact email | aurelie.gueho@univ-rennes1.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD034989
- Label: PRIDE project
- Name: Fish coelomic fluid proteomic analysis by LC-MSMS