PXD034968-1

PXD034968 is an original dataset announced via ProteomeXchange.

Title	iBench Ground Truth Validation Tool
Description	iBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. For this project, iBench was applied to Percolator rescored results from Mascot searches from a tryptic digestion of the K562 proteome, HLA-I immunopeptidome experiment, and synthetic peptide libraries. Here we provide the Mascot search results which were benchmarked as well as the original searches used to generate the ground truth identifications. These search results were generated by reprocessing RAW data from the PXD031709, PXD034056 and PXD031812 repositories.
HostingRepository	PRIDE
AnnounceDate	2022-11-29
AnnouncementXML	Submission_2022-11-29_10:06:26.483.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	MicheleMishto
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2022-06-29 15:29:32	ID requested
⏵ 1	2022-11-29 10:06:26	announced
2	2023-11-14 08:59:30	announced	2023-11-14: Updated project metadata.

submitter keyword: Mascot, proteomics,Mass Spectrometry, Benchmarking

Michele Mishto, JulianeLiepe
contact affiliation	Michele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk, Juliane Liepe, Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). Email: jliepe@mpinat.mpg.de
contact email	jliepe@mpinat.mpg.de
lab head
MicheleMishto
contact affiliation	King's College London
contact email	michele.mishto@kcl.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD034968

PRIDE project URI

• PRIDE
  1. PXD034968
     1. Label: PRIDE project
     2. Name: iBench Ground Truth Validation Tool