PXD032201 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Human hepatocellular carcinoma MHCC97H proteome |
| Description | In this work, we generated a MHCC97H proteome datasets by In-gel digestion on Orbitrap Fusion Lumos. We systematically compared RNC-seq and Ribo-seq in the context of proteome identification, especially when identifying protein isoforms from AS. We also demonstrated that the single-molecule long read sequencing technique identified thousands of new splice variants and guided the MS identifications of new protein isoforms. |
| HostingRepository | PRIDE |
| AnnounceDate | 2022-06-28 |
| AnnouncementXML | Submission_2022-06-28_08:16:06.815.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | wang hongwei |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Orbitrap Fusion Lumos |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2022-03-11 09:15:34 | ID requested | |
| ⏵ 1 | 2022-06-28 08:16:07 | announced | |
Publication List
| Wu C, Lu X, Lu S, Wang H, Li D, Zhao J, Jin J, Sun Z, He QY, Chen Y, Zhang G, Efficient Detection of the Alternative Spliced Human Proteome Using Translatome Sequencing. Front Mol Biosci, 9():895746(2022) [pubmed] |
Keyword List
| submitter keyword: Human, liver, MHCC97H, LC-MS/MS, In-gel digestion |
Contact List
| Gong Zhang |
|---|
| contact affiliation | Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University , Guangzhou 510632, China. |
| contact email | zhanggong-uni@qq.com |
| lab head | |
| wang hongwei |
|---|
| contact affiliation | JiNan University |
| contact email | 912082819@qq.com |
| dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/06/PXD032201 |
| PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD032201
- Label: PRIDE project
- Name: Human hepatocellular carcinoma MHCC97H proteome
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