PXD031941 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Template-based assembly of proteomic short reads for de novo antibody sequencing and repertoire profiling |
Description | We developed a software package STITCH (https://github.com/snijderlab/stitch) to perform template-based assembly of de novo peptide reads from antibody samples. As a test case we generated de novo peptide reads from protein G purified whole IgG from COVID-19 patients. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:55:38.025.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Joost Snijder |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-02-28 10:53:03 | ID requested | |
1 | 2022-07-21 01:32:09 | announced | |
⏵ 2 | 2023-11-14 08:55:38 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
ProteomeXchange project tag: Sars-cov-2, Covid-19 |
submitter keyword: de novo |
antibody |
serum |
Contact List
Joost Snijder |
contact affiliation | Utrecht University |
contact email | j.snijder@uu.nl |
lab head | |
Joost Snijder |
contact affiliation | Utrecht University |
contact email | joost.snijder@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/07/PXD031941 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD031941
- Label: PRIDE project
- Name: Template-based assembly of proteomic short reads for de novo antibody sequencing and repertoire profiling