PXD031733 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Thermophilic Geobacillus WSUCF1 secretome for saccharification of AFEX and EA pretreated corn stover |
Description | It is difficult to identify individual hydrolyzing enzymes using routine enzyme assays in the laboratory, which only give a collective picture of the secretome enzymatic activity. A proteomic analysis method based on liquid chromatography followed by tandem mass spectrometry (LCMS/MS) has proven significant for profiling CAZymes in secretome and is a powerful tool to identify enzymes that are otherwise impossible to detect. Furthermore, proteomic analysis of secretome against genomic data using different bioinformatics tools provides more details about CAZymes and relative quantifications of enzymes in each sample. |
HostingRepository | PRIDE |
AnnounceDate | 2022-08-12 |
AnnouncementXML | Submission_2022-08-11_23:56:08.843.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD031733 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Mengchuan Zhuang |
SpeciesList | scientific name: Geobacillus sp. WSUCF1; NCBI TaxID: 886559; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ FT |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-02-17 03:59:47 | ID requested | |
⏵ 1 | 2022-08-11 23:56:09 | announced | |
Publication List
Bhalla A, Arce J, Ubanwa B, Singh G, Sani RK, Balan V, WSUCF1 Secretome for Saccharification of Ammonia Fiber Expansion and Extractive Ammonia Pretreated Corn Stover. Front Microbiol, 13():844287(2022) [pubmed] |
Keyword List
submitter keyword: LC-MSMS, Geobacillus, ThermoFisher LTQ-FT Ultra Mass Spectrometer |
Contact List
Venkatesh Balan |
contact affiliation | Department of Engineering Technology, College of Technology, University of Houston, TX 77479, USA |
contact email | vbalan@UH.EDU |
lab head | |
Mengchuan Zhuang |
contact affiliation | University of Houston, College of Technology |
contact email | mzhuang2@uh.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/08/PXD031733 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD031733
- Label: PRIDE project
- Name: Thermophilic Geobacillus WSUCF1 secretome for saccharification of AFEX and EA pretreated corn stover