PXD031194-2

PXD031194 is an original dataset announced via ProteomeXchange.

Title	Proteomic profiling of various rabbit eye tissues
Description	Rabbits have been widely used for studying ocular physiology and pathology due to their relatively large eye size and similar structures with human eyes. Various rabbit ocular disease models, such as dry eye, age-related macular degeneration, and glaucoma, have been established. Despite the growing application of proteomics in vision research using rabbit ocular models, there is no spectral assay library for rabbit eye proteome publicly available. Here, we generated spectral assay libraries for rabbit eye compartments, including conjunctiva, cornea, iris, retina, sclera, vitreous humor, and tears using fractionated samples and ion mobility separation enabling deep proteome coverage. The rabbit eye spectral assay library includes 9,830 protein groups and 113,593 peptides. We present the data as a freely available community resource for proteomic studies in the vision field.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:33:01.434.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Guoting Qin
SpeciesList	scientific name: Oryctolagus cuniculus (Rabbit); NCBI TaxID: 9986;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	timsTOF Pro

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-24 02:52:39	ID requested
1	2022-02-21 15:23:45	announced
⏵ 2	2024-10-22 05:33:01	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

submitter keyword: eye, proteomics, mass spectrometry,Rabbit

Guoting Qin
contact affiliation	University of Houston, Houston, TX 77204
contact email	gqin@central.uh.edu
lab head
Guoting Qin
contact affiliation	University of Houston
contact email	gqin@central.uh.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD031194

PRIDE project URI

• PRIDE
  1. PXD031194
     1. Label: PRIDE project
     2. Name: Proteomic profiling of various rabbit eye tissues