PXD031041 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Effects of plasticizers on human preadipocytes (SGBS) using global proteomics |
Description | SGBS cells were used as a model system to investigate the cellular mode of action of a variety of plasticizers in human adipocytes. In brief, cells were cultured at 5% CO2 and 37°C in 95% humidity. Cells of generation 40 and passage 3 after thawing were grown to confluence with DMEM/F12 containing 33 µM biotin, 17 µM pantothenate, 100 U/l penicillin, and 0.1 mg/l streptomycin (basal medium) supplemented with 10% FCS (Gibco, Carlsbad, CA, USA). According to the standard differentiation protocol, differentiation was initiated (day 0) after changing to serum-free basal medium supplemented with 0.1 μM cortisol, 0.01 mg/ml apo-transferrin, 0.2 nM triiodothyronine, and 20 nM human insulin (differentiation medium) with the addition of 2 µM rosiglitazone, 25 nM dexamethasone, and 200 µM 3-isobutyl-1-methylxanthine for the first four days. The positive control was differentiated using the standard protocol with rosiglitazone. For plasticizer treatments, differentiation was conducted without rosiglitazone and cells were continuously exposed from day 0 – day 16 to the plasticizers or their transformation products. As for plasticizer treatments, the negative control was differentiated with rosiglitazone-free medium containing equivalent amounts of solvent (0.01 MeOH, v/v) for 16 days, resulting in minimal differentiation. All media were renewed every second day to mimic continuous exposure. |
HostingRepository | PRIDE |
AnnounceDate | 2022-06-20 |
AnnouncementXML | Submission_2022-06-19_21:18:34.519.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD031041 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Alexandra Schaffert |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-01-18 02:01:58 | ID requested | |
⏵ 1 | 2022-06-19 21:18:34 | announced | |
2 | 2023-11-14 08:54:13 | announced | 2023-11-14: Updated project metadata. |
Publication List
Keyword List
submitter keyword: TMT, SGBS, adipocytes, xenobiotics, PPARgamma, endocrine disruption |
Contact List
Kristin Schubert |
contact affiliation | Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research (UFZ), Leipzig, Germany |
contact email | kristin.schubert@ufz.de |
lab head | |
Alexandra Schaffert |
contact affiliation | Helmholtz-Centre for Environmental Research |
contact email | alexandra.schaffert@ufz.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD031041
- Label: PRIDE project
- Name: Effects of plasticizers on human preadipocytes (SGBS) using global proteomics