PXD030575 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Quantitative proteomic comparison between wild type Col and sec-5 mutant using 15N metabolic labeling |
Description | SECRET AGENT (SEC) is an O-GlcNAc transferase involved in O-GlcNAcylation of many proteins. However, sec-5 null allele mutant phenotype is very subtle. To examine if there are proteins that show altered expression in the sec-5 mutant compared to wild-type Col, we designed MS experiments to identify these candidates on a global scale using 15N metabolic labeling. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-04 |
AnnouncementXML | Submission_2022-02-04_01:38:09.137.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Shouling Xu |
SpeciesList | scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-12-21 12:15:58 | ID requested | |
⏵ 1 | 2022-02-04 01:38:09 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Quantification, 15N Metabolic labeling, Protein Prospector, Arabidopsis, SECRET AGENT (SEC) |
Contact List
Shouling Xu |
contact affiliation | Director of Carnegie Mass Spectrometry Facility, Carnegie Institution for Science, Stanford |
contact email | sxu@ciw.edu |
lab head | |
Shouling Xu |
contact affiliation | Carnegie Institution at Stanford |
contact email | sxu@ciw.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD030575 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD030575
- Label: PRIDE project
- Name: Quantitative proteomic comparison between wild type Col and sec-5 mutant using 15N metabolic labeling