PXD030409-1

PXD030409 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Development of an experimental approach to achieve spatially resolved plant root-associated metaproteomics using an agar-plate system
Description	This study demonstrated a novel peptide extraction method for plant agar-plate culture systems, which was previously unsuitable for (meta)proteomic measurements. Given the broad use of agar-plate culture systems in life sciences, this method will not only benefit other plant-microbe interface research but could be leveraged for other microbiology research in general.
HostingRepository	MassIVE
AnnounceDate	2022-05-13
AnnouncementXML	Submission_2022-05-13_09:49:05.909.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Paul Abraham
SpeciesList	scientific name: Pantoea sp. YR343; NCBI TaxID: 1144341; scientific name: Streptomyces mirabilis; NCBI TaxID: 68239; scientific name: Bacillus sp. bc15; NCBI TaxID: 1761758; scientific name: Rhizobium sp. CF142; NCBI TaxID: 1144314; scientific name: Caulobacter sp. AP07; NCBI TaxID: 1144304; scientific name: Sphingobium sp. AP49; NCBI TaxID: 1144307; scientific name: Paraburkholderia sp.; NCBI TaxID: 1926495; scientific name: Variovorax sp. CF313; NCBI TaxID: 1144315; scientific name: uncultured Duganella sp.; NCBI TaxID: 206097; scientific name: Pseudomonas sp. GM17; NCBI TaxID: 1144323; scientific name: Populus trichocarpa; common name: black cottonwood; NCBI TaxID: 3694;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive Plus

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-12-14 11:25:39	ID requested
⏵ 1	2022-05-13 09:49:06	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: plant-associated microbes, rhizosphere, agar-plate system, synthetic community, reductionist approach, metaproteomics

submitter keyword: plant-associated microbes, rhizosphere, agar-plate system, synthetic community, reductionist approach, metaproteomics

Contact List

Paul E. Abraham
contact affiliation	Oak Ridge National Laboratory
contact email	abrahampe@ornl.gov
lab head
Paul Abraham
contact affiliation	ORNL
contact email	pav@ornl.gov
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000088566/