PXD030277 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Glycoproteomics of human THP-1-derived M0, M1 and M2 macrophages |
Description | In this study, we used human THP-1-derived macrophages as an immune cell model, and systematically performed glycoproteomics of three subtypes of macrophages by StrucGP.To study the N‑Glycoproteomic of them, the intact glycopeptides were first enriched and identified using triplicate mass spectrometry (MS)-based glycoproteomic approaches, then StrucGP was used for subsequent analysis. In total three subtypes of macrophages, these intact glycopeptides consist of 253 N-linked glycan structures at 652 unique glycosites from 372 N-glycoproteins, along with their PSM information. A total of 135, 163, and 201 N-glycan structures were identified from M0, M1, and M2 macrophages, respectively. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:29:58.512.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Pengfei Li |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-12-09 03:10:49 | ID requested | |
1 | 2023-10-18 18:43:58 | announced | |
⏵ 2 | 2023-11-14 08:29:58 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: macrophages, Glycoproteomics, LC-MS/MS |
Contact List
Pengfei Li |
contact affiliation | College of Life Sciences, Northwest University, Xi'an, Shaanxi province, China |
contact email | pengfeilibio@163.com |
lab head | |
Pengfei Li |
contact affiliation | College of Life Sciences, Northwest University, Xi'an, China |
contact email | pengfeilibio@163.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/10/PXD030277 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD030277
- Label: PRIDE project
- Name: Glycoproteomics of human THP-1-derived M0, M1 and M2 macrophages