PXD029691-1

PXD029691 is an original dataset announced via ProteomeXchange.

Title	Reprogramming of sorghum proteome in response to sugarcane aphid infestation
Description	Sugarcane aphids (SCA; Melanaphis sacchari Zehntner) is a key piercing-sucking type pest of sorghum (Sorghum bicolor) which cause significant yield losses. While feeding on host plants, complex signaling networks are invoked from recognition of insect attack to induction of plant defenses. Consequently, these signaling networks lead to the production of insecticidal compounds or limited access to nutrients to insects. Previously, several studies are published on the transcriptomics analysis of sorghum in response to SCA infestation, but no information is available on the physiological changes of sorghum at proteome level. We used SCA resistant sorghum genotype SC265 for the global proteomics analysis after 1 and 7 days of SCA infestation using TMT-plex technique.
HostingRepository	PRIDE
AnnounceDate	2022-05-11
AnnouncementXML	Submission_2022-05-11_05:59:18.767.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Sophe Alvarez
SpeciesList	scientific name: Sorghum bicolor x Saccharum hybrid cultivar; NCBI TaxID: 1325292;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-11-11 09:22:48	ID requested
⏵ 1	2022-05-11 05:59:19	announced
2	2022-05-11 06:02:36	announced	2022-05-11: Updated publication reference for DOI(s): doi.org/10.1016/j.plantsci.2022.111289.
3	2023-11-14 08:30:06	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

submitter keyword: TMT, proteomics, sugarcane aphid, sorghum

Sophie Alvarez
contact affiliation	Proteomics and Metabolomics Facility, University of Nebraska - Lincoln, USA
contact email	salvarez@unl.edu
lab head
Sophe Alvarez
contact affiliation	University of Nebraska - Lincoln
contact email	salvarez@unl.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD029691

PRIDE project URI

• PRIDE
  1. PXD029691
     1. Label: PRIDE project
     2. Name: Reprogramming of sorghum proteome in response to sugarcane aphid infestation