PXD029588 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Shotgun proteomics (qMS) of zinc-replete wild type and zinc-limited wild type, altRP operon deletion mutant and its complement strain in Mycolicibacterium (Mycobacterium) smegmatis |
Description | The study was designed to describe the effects of zinc limitation on gene expression in M. smegmatis by comparing the proteomes of zinc-replete and zinc-limited wild type. Additionally, the study informs how loss of the altRP operon impacts the proteome during zinc limitation by comparing the proteomes of zinc-limited ΔaltRP mutant to the zinc-replete and zinc-limited wild type, and to confirm which changes are complemented in the complement strain (ΔaltRP/c). |
HostingRepository | PRIDE |
AnnounceDate | 2021-11-10 |
AnnouncementXML | Submission_2021-11-10_12:49:49.458.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Allexa Dow |
SpeciesList | scientific name: Mycolicibacterium smegmatis MC2 155; NCBI TaxID: 246196; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-11-05 05:00:10 | ID requested | |
⏵ 1 | 2021-11-10 12:49:49 | announced | |
2 | 2022-03-18 08:01:35 | announced | 2022-03-18: Updated publication reference for PubMed record(s): 35222334. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Mycobacteria, ribosomal proteins, zinc, Mycobacterium smegmatis, multi-omics, transcriptome, proteome, oxidative stress response |
Contact List
Sladjana Prisic |
contact affiliation | University of Hawaii at Manoa School of Life Sciences United States |
contact email | prisic@hawaii.edu |
lab head | |
Allexa Dow |
contact affiliation | University of Hawaii at Manoa |
contact email | allexa@hawaii.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD029588
- Label: PRIDE project
- Name: Shotgun proteomics (qMS) of zinc-replete wild type and zinc-limited wild type, altRP operon deletion mutant and its complement strain in Mycolicibacterium (Mycobacterium) smegmatis