PXD029447-1

PXD029447 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	TIMSFolding allows the use of ion mobility enhanced spectral libraries
Description	Files associated with the TIMSFolding preprint V1 and associated program. K562 lysates on 2 hour runs were used to generate 2 spectral libraries, the first with the native data and the second with the 1/k0 value of the corresponding spectra "folded" into the MGF spectra. We describe both the compatibility of TIMSFolded ion mobility MS/MS data with multiple search tools and demonstrate the use of the folded 1/k0 value as an additional confidence metric in peptide spectral match assignment
HostingRepository	MassIVE
AnnounceDate	2021-10-31
AnnouncementXML	Submission_2021-10-31_10:16:28.844.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ben Orsburn
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	Oxidation
Instrument	timsTOF fleX

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2021-10-31 09:53:56	ID requested
⏵ 1	2021-10-31 10:16:29	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: TIMSTOF, Spectral libraries, DDA, Historic software compatibility

submitter keyword: TIMSTOF, Spectral libraries, DDA, Historic software compatibility

Contact List

Benjamin Orsburn
contact affiliation	Johns Hopkins
contact email	borsbur1@jhmi.edu
lab head
Ben Orsburn
contact affiliation	Johns Hopkins University
contact email	orsburn@vt.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000088290/