PXD029344-1

PXD029344 is an original dataset announced via ProteomeXchange.

Title	Deep membrane proteome profiling of high-risk human paraganglioma
Description	We combined glycopeptide enrichment by N-glyco-FASP (Zielinska et al., 2010), SPEG (Tian et al., 2007) with a hydrophobic segment-oriented hpTC method (Vít et al 2016) and a standard “detergent and trypsin” approach into a tree-pronged “Pitchfork” strategy for the analysis of membrane proteome in high-risk human paraganglioma.
HostingRepository	PRIDE
AnnounceDate	2021-11-25
AnnouncementXML	Submission_2021-11-25_08:09:36.272.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Ondrej Vit
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	homoserine lactone; homoserine; acetylated residue; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2021-10-25 06:50:20	ID requested
⏵ 1	2021-11-25 08:09:36	announced

Dataset with its publication pending

submitter keyword: human, paraganglioma, membrane proteome, LC-MSMS, Pitchfork strategy

Jiri Petrak
contact affiliation	BIOCEV, First Faculty of Medicine, Charles University, Czech Republic
contact email	jpetr@lf1.cuni.cz
lab head
Ondrej Vit
contact affiliation	Charles University, First Faculty of Medicine, BIOCEV
contact email	ondrvit@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/11/PXD029344

PRIDE project URI

• PRIDE
  1. PXD029344
     1. Label: PRIDE project
     2. Name: Deep membrane proteome profiling of high-risk human paraganglioma