PXD029036 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Response of Haloferax volcanii to low-iron stress |
Description | We analyzed the response of the haloarchaeal model organism Haloferax volcanii to low iron stress on the proteome level by label-free mass spectrometry. Cells grown in minimal medium with normal iron levels were compared to those grown under low iron conditions. We separated the samples into soluble and membrane fraction to focus specifically on import/export processes which are frequently associated with metal uptake. Using a comprehensive annotated spectral library and data-independent acquisition mass spectrometry, we identified significant changes to both the membrane and the soluble proteomes of Haloferax volcanii under iron starvation. |
HostingRepository | PRIDE |
AnnounceDate | 2024-08-04 |
AnnouncementXML | Submission_2024-08-04_03:24:05.413.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Christof Lenz |
SpeciesList | scientific name: Haloferax volcanii (Halobacterium volcanii); NCBI TaxID: 2246; |
ModificationList | No PTMs are included in the dataset |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-10-10 23:13:47 | ID requested | |
⏵ 1 | 2024-08-04 03:24:05 | announced | |
2 | 2024-10-22 06:52:25 | announced | 2024-10-22: Updated project metadata. |
Publication List
Keyword List
submitter keyword: Haloferax volcanii, proteome analysis, stress response, iron deficiency, data-independent acquisition mass spectrometry |
Contact List
Christof Lenz |
contact affiliation | Core Facility Proteomics, Institute of Clinical Chemistry, University Medical Center Goettingen, Germany |
contact email | christof.lenz@med.uni-goettingen.de |
lab head | |
Christof Lenz |
contact affiliation | Max Planck Institute for Biophysical Chemistry |
contact email | christof.lenz@mpibpc.mpg.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2024/08/PXD029036 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD029036
- Label: PRIDE project
- Name: Response of Haloferax volcanii to low-iron stress