PXD028709-2

PXD028709 is an original dataset announced via ProteomeXchange.

Title	Mapping the Melanoma Plasma Proteome (MPP) using Single-Shot Proteomics and Custom Protein Databases
Description	We mapped the Melanoma Plasma Proteome (MPP) of undepleted samples a new strategy for protein identification refered here as Wise MS transfer (WiMT). We were able to identify more than 1,000 protein in undepleted plasma samples which shows a deep coverage of the plasma proteome. The MPP of undeplted samples was well characterized showing a great potential for large-scale screening of melanoma proteomics studies and other neoplastic diseases.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:53:55.171.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Natália Almeida
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF-X

Revision	Datetime	Status	ChangeLog Entry
0	2021-09-22 12:36:48	ID requested
1	2021-12-27 12:01:40	announced
⏵ 2	2023-11-14 08:53:55	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

submitter keyword: Malignant Melanoma

Plasma

Proteome

Proteomics

Biomarkers

WiMT

György Marko-Varga
contact affiliation	Clinical Protein Science & Imaging, Biomedical Centre, Department of Biomedical Engineering, Lerund University, Lund, Sweden Chemical Genomics Global Research Lab, Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul,Republic of Korea Department of Surgery, Tokyo Medical University, Tokyo, Japan
contact email	gyorgy.marko-varga@bme.lth.se
lab head
Natália Almeida
contact affiliation	Laboratory of Proteomics/LADETEC, Universidade Federal Do Rio de Janeiro, Rio de Janeiro, 21941-598, Brazil Proteomics Unit, Institute of Chemistry, Universidade Federal Do Rio de Janeiro, Rio de Janeiro, 21941-909, Brazil Clinical Protein Science & Imaging, Biomedical Center, Department of Biomedical Engineering, Lund University, Lund, BMC D13, 22184, Swede
contact email	natalia1almeida@hotmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/12/PXD028709

PRIDE project URI

• PRIDE
  1. PXD028709
     1. Label: PRIDE project
     2. Name: Mapping the Melanoma Plasma Proteome (MPP) using Single-Shot Proteomics and Custom Protein Databases