PXD028644 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil |
Description | Amycolatopsis sp. BX17 is an actinobacterium isolated from milpa soils that antagonizes the phytopathogenic fungus Fusarium graminearum. Metabolites secreted by the actinobacterium cultured in medium without glucose inhibited 100% the mycelial growth of F. graminearum RH1, while in medium supplemented with 20 g/L of glucose inhibition was 65%. With the aim of studying how the metabolism of strain BX17 is modulated by glucose, as the main carbon source, media with 0 and 20 g/L glucose were selected to analyze the intracellular proteins by quantitative label-free proteomic analysis. |
HostingRepository | PRIDE |
AnnounceDate | 2022-02-14 |
AnnouncementXML | Submission_2022-02-14_01:39:40.552.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD028644 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | José Ángel Huerta-Ocampo |
SpeciesList | scientific name: Amycolatopsis; NCBI TaxID: 1813; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive Plus |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-09-20 02:45:52 | ID requested | |
⏵ 1 | 2022-02-14 01:39:41 | announced | |
Publication List
Palafox-F, é, lix M, Huerta-Ocampo J Á, Hern, á, ndez-Ort, í, z M, Encarnaci, ó, n-Guevara S, V, á, zquez-Moreno L, Guzm, á, n-Partida AM, Cabrera R, Proteomic analysis reveals the metabolic versatility of Amycolatopsis sp. BX17: A strain native from milpa agroecosystem soil. J Proteomics, 253():104461(2022) [pubmed] |
Keyword List
submitter keyword: Actinobacteria, Antifungal activity, Conservation agriculture, Intracellular proteins, Metabolism |
Contact List
José Ángel Huerta-Ocampo |
contact affiliation | CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. Laboratorio de Bioquímica de Proteínas y Glicanos Carretera Gustavo Enrique Astiazarán Rosas No. 46 Colonia La Victoria. Código Postal 83304 Hermosillo, Sonora. México. +52 662 2892400 ext. 513 |
contact email | jose.huerta@ciad.mx |
lab head | |
José Ángel Huerta-Ocampo |
contact affiliation | CONACYT-Centro de Investigación en Alimentación y Desarrollo, A.C. |
contact email | jose.huerta@ciad.mx |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD028644
- Label: PRIDE project
- Name: Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil